RPSAP52 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003134
Fusion event
HBV-RPSAP52 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
66204457/65810677 (Hg38)
End
66204457/65810677 (Hg38)
Location type
ncRNA_intronic
Target gene
RPSAP52
Nearest miRNA
hsa-let-7i/Upstream/1188072; hsa-mir-1178/Downstream/212943;
Nearest TSS
ENST00000382841/Upstream/166280; ENST00000545998/Downstream/13454;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/68057, chr12-CpG: 222/Downstream/13060
Upstream sequence
CTCTCTCCCAAAAGCTTGGCACCAAATGGGTACTGTCTCATTCATTTGTATTACTACTTATTACTACTTACCACTTATTACTGCTTCTTATTAGTACTAC
Downstream sequence
AAGAGATAACAGTTACAGTGAACACTTTATCAAAAAATAGAAAATGATGGAACAGACTAAAATTTTCCTTTTGGTGACAACACATTTGTTGCACTTAAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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