MOSPD3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003142
Fusion event
HBV-MOSPD3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100209988/100612365 (Hg38)
End
100209988/100612365 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
MOSPD3
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-671-5p
Nearest miRNA
hsa-mir-10525/Upstream/255644; hsa-mir-10399/Downstream/255671;
Nearest TSS
ENST00000635602/Upstream/181; ENST00000497456/Downstream/7;
Nearest CpG islands
chr7-CpG: 87/Target, None/Upstream, None/Downstream
Upstream sequence
aggatgctgtaagtgcacactatgatgttcacacaattaaacaattacccaatggtgcatttcccaaatgtatccttgtcattatgagacacatgactgc
Downstream sequence
TCTGCAGGCGCCCGCTGCAGCGGGCGGAGTCTGGCTGGAGAGAGGAGGCGGGCGTCCGGGAACGCCCGGAAGGGGCGAGGCCAGCGGCGGGGCGGGGCTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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