FDPS _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003145
Fusion event
HBV-FDPS integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155287180/155317389 (Hg38)
End
155287180/155317389 (Hg38)
Location type
Intronic
Target gene
FDPS
miRNAs that regulate target gene
hsa-mir-30c-2-3p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-101-1/Upstream/122117; hsa-mir-1182/Downstream/28961;
Nearest TSS
ENST00000473358/Upstream/8404; ENST00000492887/Downstream/786;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8437, chr1-CpG: 34/Downstream/3426
Nearest cancer related gene
FDPS(OG, No orient, 0)
Upstream sequence
GAGGTTTTTGGCAAGAATAGAGTACGGTATATGAAGGTGTTTCCTAATCTCCCTGACACCAGGAATAATCTAGGGCTCATTAGAGATGTCAAAGATCTGT
Downstream sequence
TCTAGTTTCTTAACCTAAAACAAGAgtgttttagttccattttataggcggggagtctgagccaaacatgttatgtcactttccaagtctccatagcACA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate