Basic Information
VIS ID
TVIS10003149
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
122899136/120136858 (Hg38)
End
122899136/120136858 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/5927329; hsa-mir-12126/Downstream/108121;
Nearest TSS
ENST00000422679/Upstream/163764; ENST00000437707/Downstream/253419;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/766922, chr9-CpG: 40/Downstream/357901
Nearby gene
BRINP1(-767397) ; MIR147A(+108121) ;
Nearest cancer related gene
BRINP1(TSG, -767397) ; MIR147A(TSG, +108121) ;
Upstream sequence
TCCCCTCCAATCTCTACTTCCTAAAACCCTGTTTTCCAAATCCATACATCTCAGGCTTTTGCCACAAAAGTTTGATTTTATAAGCATATATCTGTAAAAa
Downstream sequence
GCTATCATCTCAACATCTCAACAACTTACCTAATGTGGTGGGGAAAATGTGGTCTCAAATCCTCCCAagctctgtgacttcaaatgagtcatcttccctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate