Basic Information
VIS ID
TVIS10003151
Fusion event
HBV-chr21 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
21759010/20386698 (Hg38)
End
21759010/20386698 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1700534; hsa-mir-155/Downstream/2692586;
Nearest TSS
ENST00000624081/Upstream/127878; ENST00000486367/Downstream/416365;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2141141, chr21-CpG: 89/Downstream/610407
Nearby gene
LINC00320(+355898) ;
Upstream sequence
acagtctaagaagaaatttttatttttgagttttgttcatctttttacttgttgttaagacagagtggttgacttctaaggcgcttatatgacagattgT
Downstream sequence
TTGGCATGCTTTTTAAGGTAATAGGGAGTTGATCATTAGCATATGAAATAAATAGAATCAATTTTAAACAGATATTAATAATTTTATCTGAATATTTGCC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate