ZFPM2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003166
Fusion event
HBV-ZFPM2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
106634614/105622386 (Hg38)
End
106634614/105622386 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8A
Target gene
ZFPM2
miRNAs that regulate target gene
hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-26b-5p ; hsa-mir-184
Nearest miRNA
hsa-mir-12123/Upstream/1137921; hsa-mir-10400/Downstream/7021107;
Nearest TSS
ENST00000518652/Upstream/93502; ENST00000522296/Downstream/63379;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/302494, chr8-CpG: 19/Downstream/593171
Upstream sequence
acatttgttatataatttactctgaagcttctttgctattttttttgtctgggagatttgtcccatgctgaaagtggggggttgaagtccccagctatta
Downstream sequence
TGACTGAGAATATTCTCCAAAATCTACCTGATTAAGaaattaaatattttaatataaaatttCAGGTTTACAATGAGCACAGAGATCTTGCCTTTCATAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate