Basic Information
VIS ID
TVIS10003231
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
67527518/66817625 (Hg38)
End
67527518/66817625 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/9427413; hsa-mir-10524/Downstream/4559335;
Nearest TSS
ENST00000381078/Upstream/1110400; ENST00000449928/Downstream/1071714;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/722687, chr6-CpG: 37/Downstream/1817215
Nearby gene
SLC25A51P1(-1028142) ; ADGRB3(+1818114) ;
Upstream sequence
gagcccttggaggcattctttggaaaagggaatgtcttcacgtaaaaggcagacagaagtgttctcagaaactgctttgtgatgtctgtgttcaactcac
Downstream sequence
TTTCCCAGAACGACAGTGCGATTCTTCCAGAAAATCATTGTAGTGTTAAAGTCTCTGAGGCAGCTTTTAAAATAACTATTTtgccaatttcttggttgtg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate