Basic Information
VIS ID
TVIS10003265
Fusion event
HBV-YBX1P10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
35972234/35972237 (Hg38)
End
35972234/35972237 (Hg38)
Location type
Intronic
Target gene
YBX1P10
Nearest miRNA
hsa-mir-101-2/Upstream/239242; hsa-let-7a-1/Downstream/851302;
Nearest TSS
ENST00000422679/Upstream/14083; ENST00000475774/Downstream/64196;
Nearest CpG islands
chr9-CpG: 25/Target, None/Upstream, None/Downstream
Nearby gene
OR2S2(-14083) ; RECK(+64676) ;
Upstream sequence
ccagctactcgggaggctgaaacaggagaatcacctgagcccgggaggcagaggttgcaatgagccacaaacgtgccactgcactctagcctgggcaata
Downstream sequence
GGGTGGGTGTCGGCGGCGCTGAGGGCGGGGGCGGCGTGGGGGAGCGGCGGGCGGCTGCTGGGTCTCGGCCTCGCTGCTCATAGTTGCGGTGATGGTGACT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate