Basic Information
VIS ID
TVIS10003275
Fusion event
HBV-LINC02701 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
68640779/68873311 (Hg38)
End
68640779/68873311 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA11H ; FRA11A
Target gene
LINC02701
Nearest miRNA
hsa-mir-10392/Upstream/828354; hsa-let-7a-2/Downstream/209865;
Nearest TSS
ENST00000527297/Upstream/2647; ENST00000545146/Downstream/30467;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/17527, chr11-CpG: 62/Downstream/18762
Nearby gene
CPT1A(-31380) ; MRPL21(+17967) ;
Upstream sequence
aaaacttcaaggtaccctgtctatgatgaagttagaagaagaaacaaaagagatgcagacacaaagaggtataaaaataagagattgaaaaggcacaaat
Downstream sequence
tagccccctgaaaaaataattccatactataggccagctacctgggcacaagataggtcatagggagaccgcactcctatctacatgcttaaccgtatca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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