Basic Information
VIS ID
TVIS10003284
Fusion event
HBV-FGF4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
69598033/69783265 (Hg38)
End
69598033/69783265 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA11H ; FRA11A
Target gene
FGF4
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10392/Upstream/700007; hsa-let-7a-2/Downstream/500690;
Nearest TSS
ENST00000527297/Upstream/7862; ENST00000534086/Downstream/34285;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/7487, chr11-CpG: 32/Downstream/27075
Nearest cancer related gene
FGF4(OG, No orient, 0)
Upstream sequence
GGACAAGGGCTCAGAGGGATAAGGATAATCTCTGGTACATTTTAACTATGAATGATTTAAAATACTCTTACTCTTTTTTGTTGTTCTTGttcttggtttt
Downstream sequence
ttttttttttttcttttgagacagggtcccactctgttacaggctggagtgcagtgaggcaatcatcgctcactgaagcctcaaactcctgggctcaagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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