Basic Information
VIS ID
TVIS10003306
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
70292876/70446770 (Hg38)
End
70292876/70446770 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-10392/Upstream/162700; hsa-let-7a-2/Downstream/425500;
Nearest TSS
ENST00000527297/Upstream/17648; ENST00000429561/Downstream/28400;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/35320, chr11-CpG: 46/Downstream/16821
Nearby gene
CTTN(-10186) ; SHANK2(+21085) ;
Nearest cancer related gene
CTTN(OG, -10186) ;
Upstream sequence
tatatacaaagggatcatactgtacttcaccttctacaacgtgctttatcaatgtgatatattttgcccatctttctctctctttttttttttttttttt
Downstream sequence
gagatggagttttgctcttgttgcccaggctggagtgcaatggcgtcatctcagctcaccgcaacctctgtctcctgggttcaagcgattctcctgcctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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