Basic Information
VIS ID
TVIS10003307
Fusion event
HBV-LINC00333 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
84862716/84288581 (Hg38)
End
84862716/84288581 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00333
Nearest miRNA
hsa-mir-1297/Upstream/6590465; hsa-mir-1267/Downstream/3330084;
Nearest TSS
ENST00000623511/Upstream/406188; ENST00000446314/Downstream/273783;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/408819, chr13-CpG: 121/Downstream/3382733
Upstream sequence
TTTTAATAGTGAACAATACTCTTATTTTAGAGTCTAGAGATGAAGTGAAAATAAGTAAGTGGAAAAAAAAGGAAGAAAAACAAAACTCCTGCATGGTATT
Downstream sequence
ACCTGATCAACCTAATCAACTGATTTTGTTGTCTAAGAAATCTCCTTTTGaaaaatagaaaaaaaaatactaagaagatcttccaaaaccacataaatga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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