Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003311
Fusion event
HBV-SND1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q32.1
Reference genome
End
127721392/128081340 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-93-5p ; hsa-mir-16-5p ; hsa-mir-361-5p ; hsa-mir-6878-5p ; hsa-mir-198 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6770-5p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-6760-5p ; hsa-mir-4270 ; hsa-mir-6756-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6845-3p ; hsa-mir-4469 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-5009-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-184
Nearest miRNA
hsa-mir-10525/Upstream/1023156; hsa-mir-10399/Downstream/521;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/48540, chr7-CpG: 46/Downstream/22802
Upstream sequence
aaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaaaaaaaaaagaaagaaagaaaa
Downstream sequence
CTGCCGACTGAACATGCAGGTCTGGGCCCACTATGAGGAGCAGCCCGTGGAGGAGGTGATGCCAGTGCTGGAGGAGAAGGAGCGATCTGCTAGCTACAAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.