Basic Information
VIS ID
TVIS10003323
Fusion event
HBV-chr13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
22612977/22038838 (Hg38)
End
22612977/22038838 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-4499/Upstream/1604992; hsa-mir-1267/Downstream/2123578;
Nearest TSS
ENST00000623511/Upstream/160678; ENST00000611481/Downstream/2137;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/363222, chr13-CpG: 30/Downstream/657603
Nearby gene
LINC00424(-160678) ; LINC00540(+171447) ;
Upstream sequence
gtaaattatctgaattgattttctgatgttaaaaacaacatttgcctcctggaataactaaatttagccatgaattattttgacataaattattttaagg
Downstream sequence
cacgtttcttaatttccaaacaaatgcactatacctagttatcttttctgttattgatttttaccctaatttcattgtggtcagagaaaatggtctagat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate