Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003327
Fusion event
HBV-TXLNB integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
End
139601279/139280142 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-6741-3p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-642a-5p ; hsa-mir-3124-3p ; hsa-mir-4778-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-4469 ; hsa-mir-1266-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p
Nearest miRNA
hsa-mir-10398/Upstream/844848; hsa-mir-1202/Downstream/925110;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/112905, chr6-CpG: 18/Downstream/92940
Upstream sequence
ctcagatctgcctcctctagtctctgcagcatggtttctTACCCCTAGTTCCTGCTACCATTCATAGCTGAAGTTGGAGGCTTGTGTAATTCATGGTTAC
Downstream sequence
tctggaggctgaggcaggagaatcgcttgaaccagggaggcagaaattgcagtgagccgagactgtaccactgcactccggcctggcaacagagcaagac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.