ANO4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003334
Fusion event
HBV-ANO4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
101348806/100955028 (Hg38)
End
101348806/100955028 (Hg38)
Location type
Intronic
Target gene
ANO4
miRNAs that regulate target gene
hsa-mir-378c
Nearest miRNA
hsa-let-7i/Upstream/765079; hsa-mir-1178/Downstream/2975397;
Nearest TSS
ENST00000382841/Upstream/95766; ENST00000549234/Downstream/32091;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/237184, chr12-CpG: 62/Downstream/254581
Upstream sequence
TGTCCTTGTGTTTGTGATGCAGGGGAGGGAAAAGAAACAAGGAAAGACAAGCTAAAAATTCCTTCCACCATAACTGCCCACAGAGGAATTAAAGAAGGTT
Downstream sequence
CCCTTTGTCGTGTCCAGCCCCTGCAGTGAGAGTATCAATCCTCATGcacacgtgtattgagcgtctattatgttccaggcattgtgccaggcactggaga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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