Basic Information
VIS ID
TVIS10003348
Fusion event
HBV-LINC01241 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p21.2
Reference genome
End
25783281/25783283 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-2/Upstream/4271098; hsa-let-7a-1/Downstream/3080343;
Nearby gene
TUSC1(-104425) ; LOC100506422(+283392) ;
Upstream sequence
agcttgtttcaagttagaccacccccttttagaagtgtgcgtaaaaggcaagtgctgtctttgttcagggtccagtctttggatattaatctgctggttc
Downstream sequence
cacacacacacacacacacacacacatacacacatacacacaTATATATAACAAGCCAACAAAAATcctcctctctggtttcccatggaagctatgtatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate