Basic Information
VIS ID
TVIS10003350
Fusion event
HBV-LINC01299 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
66455966/65543731 (Hg38)
End
66455966/65543731 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC01299
Nearest miRNA
hsa-mir-124-1/Upstream/1164474; hsa-mir-10400/Downstream/9004812;
Nearest TSS
ENST00000518652/Upstream/363390; ENST00000523170/Downstream/19049;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/744566, chr8-CpG: 32/Downstream/90092
Upstream sequence
atattttatgtacagtatataatatgtattttgggtactttgatattttatgtacagtatataataagtatttggtgtactttgatattttatgtacagt
Downstream sequence
ggtccagagactgataccctgtgaaaaagataggattttgacatgtaattcagagggataaaatataaatgtggagtcattttaggaatattttaaccaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate