IQUB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003357
Fusion event
HBV-IQUB integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q31.32
Reference genome
GRCh37/hg19
Start
123145762/123505708 (Hg38)
End
123145762/123505708 (Hg38)
Location type
Intronic
Target gene
IQUB
Nearest miRNA
hsa-mir-10525/Upstream/6485389; hsa-mir-10399/Downstream/3552380;
Nearest TSS
ENST00000635602/Upstream/49079; ENST00000437535/Downstream/27240;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/618803, chr7-CpG: 43/Downstream/26970
Upstream sequence
ggacctctagaaagtagatgccgatatggaatttggagtgtaagatattggttgtgggaaatatctgtgaaggacagaggtgagaatgagcaagCATACA
Downstream sequence
tgacaagaggggctgccatgaaggtctctgaaatgactttgaggcattttccccattatcttggccattaacatttggctcctttttattatataaattt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate