Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003372
Fusion event
HBV-PPIEL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
Start
End
40005106/39539434 (Hg38)
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1450105; hsa-mir-101-1/Downstream/1214921;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/23338, chr1-CpG: 117/Downstream/36211
Upstream sequence
TGGGCGGCGTGATTGCCCAGGGCATGggttctcagtggtatcatactgccccctaggggctaccagaaactgcagtctatttttggtggtcagtaatacg
Downstream sequence
gtgctactggcattggaaggaagggatcagggagggactctagatgtcctgcagtctcctacgtaatggagagttactctaaatcctggactttcaaaag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.