ABCA13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003375
Fusion event
HBV-ABCA13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48348631/48309034 (Hg38)
End
48348631/48309034 (Hg38)
Location type
Intronic
Target gene
ABCA13
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3427234; hsa-mir-10399/Downstream/8646751;
Nearest TSS
ENST00000635602/Upstream/29758; ENST00000484268/Downstream/4033;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/218670, chr7-CpG: 37/Downstream/145730
Upstream sequence
tgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacttaatgataaagggatcaattcaacaagaa
Downstream sequence
acacacacacacacacacacacacacacacattctcttggttctgtttctctggaggaccctgactactacaCCATTATTTATATCTTACTGTATTTTGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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