CNTNAP4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003384
Fusion event
HBV-CNTNAP4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
76590785/76556888 (Hg38)
End
76590785/76556888 (Hg38)
Location type
Intronic
Target gene
CNTNAP4
Nearest miRNA
hsa-mir-1225/Upstream/6526466; hsa-mir-11401/Downstream/312048;
Nearest TSS
ENST00000527434/Upstream/3471; ENST00000619533/Downstream/488;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/321593, chr16-CpG: 34/Downstream/78050
Upstream sequence
CATGTACAGAATTTGGTTACCACATTTATATTAATCAGCAACGATTTTCTACCTGTCTCAGGTAAGGCTGACCTAGCCAAAAATTGGCTTGGCTATTGGA
Downstream sequence
CGTGCTCTAATTGGCCAGGGTGAATCGGCCTAGCAGGTTATATGCACAGGAATCTGTTGTGATTAATAAAAACCTTCAAATCTTTGACTTCCTCGCACTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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