Basic Information
VIS ID
TVIS10003387
Fusion event
HBV-LINC02609 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
End
91316454/90850897 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/4493210; hsa-mir-11399/Downstream/2995935;
Nearest CpG islands
chr1-CpG: 103/Target, None/Upstream, None/Downstream
Nearby gene
BARHL2(-133660) ; ZNF644(+64403) ;
Upstream sequence
CTCGTGGGCGGGACTGGAGGCGGCCAGATAGGCAAGAACCCGCAACAGGAGTAGGGACATTTTTTCTTCAAATTCCAATCCCATCCAGCGATAGACAGGC
Downstream sequence
GCGTGGGTCTCCCTCCTCCACGACCACCACACAATGGCACACACTTTTGCTGGAAACTGAAATCGAAGTCTCTGAGGCAGGCTGGGGCCCAGGCCGGCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate