VISDB Viral Integration Site DataBase

VIS ID

TVIS10003399

Fusion event

HBV-ATAD5 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

29207531/30880513 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-16-5p ; hsa-mir-93-3p ; hsa-mir-4477b ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-3163 ; hsa-mir-1277-5p ; hsa-mir-6816-3p ; hsa-mir-8080 ; hsa-mir-548c-3p ; hsa-mir-374b-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-1233-5p ; hsa-mir-6778-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-508-3p ; hsa-mir-5186 ; hsa-mir-194-3p ; hsa-mir-4676-5p ; hsa-mir-575 ; hsa-mir-4519 ; hsa-mir-4274 ; hsa-mir-32-3p ; hsa-mir-3591-5p ; hsa-mir-921 ; hsa-mir-3606-5p ; hsa-mir-3117-5p ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-3200-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-33a-3p ; hsa-mir-409-3p

Nearest miRNA

hsa-mir-1180/Upstream/763341; hsa-mir-10226/Downstream/213837;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/48108, chr17-CpG: 29/Downstream/25728

Upstream sequence

gcctgaccaacatggtaaaaccccatctctattaaaaatacaaaattagctgggcgtggtggcgcatgcctgtaatcccagctacttgggaggctgtggc

Downstream sequence

aggagaatcgcttgaatttgggagatggaggttgtggtgagcctagatcgtgctattgcactccagcctgggcaacaagagtgaaactacatctcaaaaa