Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003407
Fusion event
HBV-ARHGAP20 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q23.1
Reference genome
End
110523389/110652666 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10392/Upstream/6802686; hsa-let-7a-2/Downstream/695091;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/222056, chr11-CpG: 197/Downstream/58450
Upstream sequence
tcacaagcattcctataaaccaacaacagacaagcagagagccaaatcatgaatgaacttccattcacaatcgctacaaagagaataaaatacctaagaa
Downstream sequence
ttcagctaacaagggaaatgaagtacctcttcaagaagaactacaatccactgctcaaggaaatcagagagaacacaaacaaatggaaaaacattccatg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.