Basic Information
VIS ID
TVIS10003416
Fusion event
HBV-LOC106029312 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
74279718/74863418 (Hg38)
End
74279718/74863418 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
LOC106029312
Nearest miRNA
hsa-mir-10525/Upstream/267392; hsa-mir-10399/Downstream/1051779;
Nearest TSS
ENST00000635602/Upstream/11867; ENST00000622472/Downstream/101400;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11631, chr7-CpG: 85/Downstream/26726
Nearby gene
GTF2IRD2(-11846) ; STAG3L2(+18374) ;
Upstream sequence
TTGAGTCCAGGACATAGAAGACAAGTCATCAGCAATATCTGCTATAGCCAGTTTTCTTTTTCTTTTTAAGAATATATACACATTTTCttgggggtcccca
Downstream sequence
attgcttcaatctgggaggtggaggttgcagtgggccaagatcgcgccattgcactccagcctggacaacaagagcaaaactcagtctcaaaaaaaaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate