Basic Information
VIS ID
TVIS10003419
Fusion event
HBV-SLC9A7P1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
98852510/98458732 (Hg38)
End
98852510/98458732 (Hg38)
Location type
Promoter
Target gene
SLC9A7P1
Nearest miRNA
hsa-let-7i/Upstream/463284; hsa-mir-1178/Downstream/1731152;
Nearest TSS
ENST00000382841/Upstream/166287; ENST00000548911/Downstream/32354;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1508, chr12-CpG: 25/Downstream/45094
Upstream sequence
gcatggcacatatatacatatgtaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataataaaaTAAaaaaatacaaaaataaa
Downstream sequence
atttagccgggcatggtgacgggtgcctgtaatcctagctactcaggaggccgaagcaggagaatcacttgaaccctggaagcggaggttgcagtgagcc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate