Basic Information
VIS ID
TVIS10003437
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
114226/114226 (Hg38)
End
114226/114226 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Downstream/1276088;
Nearest TSS
ENST00000381078/Downstream/89087;
Nearest CpG islands
None/Target, None/Upstream, chr6-CpG: 120/Downstream/177722
Nearby gene
LINC00266-3(+26038) ;
Upstream sequence
aaatttctattggctgcaccttcaaaatataatctgaattgaaccacttctcattatctccaacagtactactactgttggccaagccatcatcatctct
Downstream sequence
CTCACCGATTTACTAAGTATAGATTTTATTTCTATCCCTCACCTACCTGTTTTGCCAAGGGAACTAAGAAAAGAGCATCATCAAAAATTCAGATAGGTAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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