Basic Information
VIS ID
TVIS10003440
Fusion event
HBV-LOC339260 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
20876654/20973341 (Hg38)
End
20876654/20973341 (Hg38)
Location type
Intronic
Target gene
LOC339260
Nearest miRNA
hsa-mir-1180/Upstream/1628767; hsa-mir-10226/Downstream/6320569;
Nearest TSS
ENST00000595228/Upstream/9619; ENST00000580962/Downstream/26406;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/64496, chr17-CpG: 39/Downstream/68545
Nearby gene
PRPF31(-68111) ; USP22(+26252) ;
Upstream sequence
ttttcattttgatgaagtccaatttttatccatcttctcgtctatcatgcacatttggcgtcattgcctaaccccaaatcataaagatttaattccatgt
Downstream sequence
tttcttctaagagttctatagttttagctcttacatgtaagtctgtgacctactttgagctcacgtttgtgtgtggtgtgagaaaggggcccaagttcat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate