Basic Information
VIS ID
TVIS10003447
Fusion event
HBV-chr15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
102408796/101868593 (Hg38)
End
102408796/101868593 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/3084091; hsa-mir-1302-10/Downstream/91866;
Nearest TSS
ENST00000557528/Upstream/56391; ENST00000559252/Downstream/54502;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/103773, chr15-CpG: 116/Downstream/92558
Nearby gene
OR4F13P(-18269) ; OR4F4(+53549) ;
Upstream sequence
ACCTATCTGAATTTTTGATGATGCTGTTTTCTTAGTTCCCTTGGCAAAACAGGTAGGTGAGGGATAGAAATAAAATCTATACTTAGTAAATCGGTGAGCC
Downstream sequence
AAGGTCTGTGACTGGCAATGAGTGAATTACATTCTCCTCAGTTGGGTGCAATGTCTGCCTTCTGTGTGGCCATTTGCTGTTGCCACTAGAGAAGGAGGAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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