VISDB Viral Integration Site DataBase

VIS ID

TVIS10003448

Fusion event

HBV-BICDL1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr12

Cytoband

q24.23

Reference genome

Start

End

120427384/119989580 (Hg38)

Location type

Promoter

Fragile sites / regions

FRA12E ; FRA12C

Target gene

miRNAs that regulate target gene

hsa-mir-4260 ; hsa-mir-1227-5p ; hsa-mir-3678-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-2861 ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-661 ; hsa-mir-2467-3p ; hsa-mir-423-5p ; hsa-mir-6776-5p ; hsa-mir-3184-5p ; hsa-mir-3158-5p ; hsa-mir-6742-3p ; hsa-mir-4779 ; hsa-mir-1249-5p ; hsa-mir-1273a ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-2278 ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4519 ; hsa-mir-4716-3p ; hsa-mir-4728-5p ; hsa-mir-5693 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6731-5p ; hsa-mir-6760-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6794-5p ; hsa-mir-6797-5p ; hsa-mir-6798-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-8085

Nearest miRNA

hsa-let-7i/Upstream/275856; hsa-mir-3612/Downstream/165854;

Nearest TSS

Nearest CpG islands

chr12-CpG: 189/Target, None/Upstream, None/Downstream

Upstream sequence

gcagcggcaacagGGCGGCTGAGAACCCGGCGGCGGCGTTCCTCCTCGCTTCCTCCCCTCCCGCTTCGCCGACCCTCAGTCTCTGTTCCTGAGTCCTCCC

Downstream sequence

TTCCCCAGCCTTCCCGTTCCCACCACCTACTCCGCCACTACCCCCACCCCCTCCTCCCGCGCGCGCCTGAGCAGCTGAGCCcgggggcgggggagggggc