Basic Information
VIS ID
TVIS10003467
Fusion event
HBV-LOC110121190 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
155581820/154660668 (Hg38)
End
155581820/154660668 (Hg38)
Location type
Intronic
Target gene
LOC110121190
Nearest miRNA
hsa-mir-12113/Upstream/2124152; hsa-mir-1305/Downstream/4468134;
Nearest TSS
ENST00000502981/Upstream/33596; ENST00000510919/Downstream/80170;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/33498, chr4-CpG: 23/Downstream/79858
Nearby gene
FGG(-47918) ; LRAT(+83343) ;
Upstream sequence
ATCCCACTATAAATAACTAAAACAGATTTGTGTGCTATGGTAAGTATTTAATTATGAAAATGACTATGTCATTAAATTGCTAGAGAAAACTTTAAAAGGT
Downstream sequence
aaaaaaaaagaaagacaaaaCTAATTGGGTCATAAAATACAACAAATTCTAAGAGAACTTTATTGAATCAATTGAAATAATATTGTTTCTAATCATTTAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate