Basic Information
VIS ID
TVIS10003475
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
146160936/145403368 (Hg38)
End
146160936/145403368 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2K
Nearest miRNA
hsa-mir-128-1/Upstream/4816683; hsa-mir-10b/Downstream/3926910;
Nearest TSS
ENST00000437798/Upstream/71521; ENST00000414967/Downstream/184656;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/878880, chr2-CpG: 49/Downstream/1183865
Nearby gene
TEX41(-326645) ; PABPC1P2(+1183689) ;
Upstream sequence
TTCTGATGTAAAAATTAAGGCCATCAGAGCAAATTAAAAGATATTACACAGTAGATTTTAGGTGTCCTTCCTCTGTCAGTAATTCAAAGCCTCATTTGAT
Downstream sequence
GAGGGTTGTTCTGAATGTAAAGTTTTGCACTTACACAGAGTACAGGCATTGCTAAACTTTGACCAGAGTGTGGGATCCAGGTCCCATTTTCTAACCTGTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate