Basic Information
VIS ID
TVIS10003485
Fusion event
HBV-chr20 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
12728517/12747870 (Hg38)
End
12728517/12747870 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/2098175; hsa-mir-1-1/Downstream/5722745;
Nearest TSS
ENST00000382410/Upstream/431385; ENST00000432244/Downstream/187913;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/856311, chr20-CpG: 217/Downstream/472153
Nearby gene
BTBD3(-821274) ; SREBF2-AS1(+117335) ;
Upstream sequence
cccagctacttgggagactgaggcaggagaattgcttgaactcaggaggcggaggttgcagtgagcagagatcacaccattgcactccagcctggatacc
Downstream sequence
aagagtgaaactccatctcaaaaaaaaaaaaagaaagaaagaaaCGGCTACATTCTTCATTAACTGaaaaaaaaaaaaaagaaaaagaaaagtaggaaag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate