Basic Information
VIS ID
TVIS10003488
Fusion event
HBV-chr17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
16416437/16513123 (Hg38)
End
16416437/16513123 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1253/Upstream/231035; hsa-mir-10226/Downstream/1300357;
Nearest TSS
ENST00000595228/Upstream/20970; ENST00000577569/Downstream/50141;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/20594, chr17-CpG: 49/Downstream/22395
Nearby gene
LRRC75A(-20932) ; ZNF287(+37194) ;
Upstream sequence
gaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgttgggattacaggcgtgagccaccgtgcctggccCATCCTAGtttctttctttc
Downstream sequence
ttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcatgatcttggctcatagcaacctccgcctcccgggttcaagc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate