Basic Information
VIS ID
TVIS10003510
Fusion event
HBV-chr22 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19540550/19553027 (Hg38)
End
19540550/19553027 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-3198-1/Upstream/1572066; hsa-let-7a-3/Downstream/410726;
Nearest TSS
ENST00000624155/Upstream/25482; ENST00000452326/Downstream/13812;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/28296, chr22-CpG: 30/Downstream/13464
Nearby gene
CLDN5(-27690) ; LINC00895(+13103) ;
Upstream sequence
ggtatcctgactttgttaaattttttttttttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgtgtgatctcggctcactgc
Downstream sequence
aacctctgcctccccatttcaagtgattctcctgcctcagcctcttgagtagctgggattacaggcacccgccaccacgccccactaattttttgtattt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate