TMEM217 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003514
Fusion event
HBV-TMEM217 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
37196159/37228383 (Hg38)
End
37196159/37228383 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
TMEM217
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1236/Upstream/605871; hsa-mir-10398/Downstream/326982;
Nearest TSS
ENST00000381078/Upstream/9894; ENST00000373491/Downstream/29213;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/56725, chr6-CpG: 29/Downstream/29199
Upstream sequence
aacaggtagtatttgttagatgagtaagttctttagtggtgatttgtgagatttttggtgtacctatcactcacacagtatacattgagcccaatttgta
Downstream sequence
TCACAAGAGTGAAACTCCATCTCAAAAAATAATAATAAggccaggcgtgatggctcacgcttgtaatctcagcactttgagagaccaaggtgggtggatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate