Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003517
Fusion event
HBV-GANC integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
Start
End
42593196/42300998 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1233-1/Upstream/101332; hsa-mir-10393/Downstream/1492661;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/26792, chr15-CpG: 25/Downstream/189763
Upstream sequence
tcccagctactagggaggctgaagcaggagaatcacatgaacctgggaggtggaggttgcagtgagccaagatgatgccattgcactccagcctgggcaa
Downstream sequence
caagagtgaaactccatctcaaaaaaaaaaaaagaaagaaagaaagaaaaTGTGGTATGCTgtggctggcaagatggctgaataggaacagctccggcct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.