hsa-mir-130b-3p _LIHC.png
SLMAP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003526
Fusion event
HBV-SLMAP integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
57850126/57864399 (Hg38)
End
57850126/57864399 (Hg38)
Location type
Intronic
Target gene
SLMAP
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-let-7g/Upstream/2011805; hsa-mir-12124/Downstream/2753406;
Nearest TSS
ENST00000440867/Upstream/2399; ENST00000475055/Downstream/158;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/107136, chr3-CpG: 90/Downstream/143712
Upstream sequence
gaaatgatatagacttaaaattgaataaagtggtaataaagttagacaattaaaaactgaagaatcatcaaatatcatgccttgaaagattataataaac
Downstream sequence
GTCAGGTTTACAGATAATGTTCTGTAGAACATTTCTTTTCTACAGAACAAACTTTTCTTAGAAGTTTAAGTGAATAAAGGCATTCCTGGGGCTCGCTCTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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