hsa-mir-4761-5p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003533
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
73922925/71308009 (Hg38)
End
73922925/71308009 (Hg38)
Location type
Intronic
Target gene
LOC107987079 ; TRPM3
miRNAs that regulate target gene
hsa-mir-204-5p ; hsa-mir-4433b-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6778-3p ; hsa-mir-532-3p ; hsa-mir-1281 ; hsa-mir-1224-3p ; hsa-mir-6814-5p ; hsa-mir-4761-5p
Nearest miRNA
hsa-mir-101-2/Upstream/497925; hsa-let-7a-1/Downstream/12661739;
Nearest TSS
ENST00000422679/Upstream/186411; ENST00000473252/Downstream/138826;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/887700, chr9-CpG: 50/Downstream/138588
Nearby gene
TRPM3(-186411) ; CEMIP2(+375357) ;
Upstream sequence
TAATCTACCCACTTCTCTATCTCTATATAGTAACATATGAAAATCAGGCCTCTCTTCTTCTAATGGACATACACACGTTTGCATATAGAATATCAGACTC
Downstream sequence
gcccaggctggagttcagtagcacaatcttggctcactacaacctccatttcctgggttcaagtgattctcctgcctcagcctcccaagcagctgggatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate