Basic Information
VIS ID
TVIS10003535
Fusion event
HBV-LINC01578 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
93416986/92873756 (Hg38)
End
93416986/92873756 (Hg38)
Location type
Promoter
Target gene
LINC01578
Nearest miRNA
hsa-mir-10393/Upstream/2866915; hsa-mir-1302-10/Downstream/30643;
Nearest TSS
ENST00000557528/Upstream/54158; ENST00000627622/Downstream/9657;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/63904, chr15-CpG: 99/Downstream/8959
Upstream sequence
taatgctgctgtgaacatgggagtgcagatatctcttggggacactgattttgattcttttttttttttttttttgagatggagtttcactcttgtgaaa
Downstream sequence
tggcaatgatgtcggctcacagcaacctccacctcccgggttcaagctattctcttgcctcagcctcccgaggagctgggattacaggcatgtgccacca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate