SORCS1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003537
Fusion event
HBV-SORCS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
108707572/106947814 (Hg38)
End
108707572/106947814 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
SORCS1
miRNAs that regulate target gene
hsa-mir-5582-3p
Nearest miRNA
hsa-mir-107/Upstream/2679409; hsa-mir-202/Downstream/3950276;
Nearest TSS
ENST00000439456/Upstream/248456; ENST00000421481/Downstream/8769;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2304760, chr10-CpG: 100/Downstream/216208
Upstream sequence
aggcacctgcaatcccagctactcaagagattgaggcaggagaattgcttgaaccagagagaggcagaggttgcagtgagccgagaacatgccatcactc
Downstream sequence
ttcacaagagtgaaactccatctcaaaaaaaaaaaagagaaaaagaaactagagctacaaacagtacctattttatggggttgttaaaaggataaaagaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate