Basic Information
VIS ID
TVIS10003546
Fusion event
HBV-LOC102724419 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
163836133/164118345 (Hg38)
End
163836133/164118345 (Hg38)
Location type
Intronic
Target gene
LOC102724419
Nearest miRNA
hsa-let-7g/Upstream/3713520; hsa-mir-1224/Downstream/53126;
Nearest TSS
ENST00000440867/Upstream/643278; ENST00000494915/Downstream/567731;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/113838, chr3-CpG: 23/Downstream/3261794
Nearby gene
LINC01192(-815044) ; SI(+860553) ;
Upstream sequence
CAGATTTCAGAGAATGTTTCCTTGACCAGCCTATGTATAAGTTACTGtccaagcatggtctgaacacagaggcctctgcagtctctcttgttactgatct
Downstream sequence
caagagtgaaactccatctcaaaaaaaaaaagaaagaaagaaaaCCCTTTACTTACAGGTTAGATCAGATGACTGAAGAATTGTATTGGTGAGGCTTATG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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