Basic Information
VIS ID
TVIS10003553
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
End
249240561/248946362 (Hg38)
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-101-1/Upstream/119919;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39571, None/Downstream
Nearby gene
PGBD2(-27216) ;
Upstream sequence
gttagggtgttagggggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtgttagggggttagggttagggt
Downstream sequence
tagggttagggttagggttagggttagggttagggttagggttaagggttagggttagggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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