hsa-mir-541-5p _LIHC.png
UBE3A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003554
Fusion event
HBV-UBE3A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
25679816/25434669 (Hg38)
End
25679816/25434669 (Hg38)
Location type
Intronic
Target gene
UBE3A
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-24-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-944 ; hsa-mir-5007-3p ; hsa-mir-6739-3p ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-3613-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-369-3p ; hsa-mir-541-5p ; hsa-mir-5692a
Nearest miRNA
hsa-mir-1268a/Upstream/1872538; hsa-mir-10393/Downstream/414078;
Nearest TSS
ENST00000557528/Upstream/13936; ENST00000557558/Downstream/3660;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/478762, chr15-CpG: 143/Downstream/3579
Upstream sequence
ACAGATCTGCAGATGGCATTTTGTGAAGGCTGCCTTCTATTAATAGTGTACAAAACACTCATATGTCTCCAAAAAGGTGGGTGAGTAATCACAAAGCAAG
Downstream sequence
TATAACTATTCATCCCAAAAGGTAGGACAGAACATGTGCCAATGTGTGCagagtcctgaactagagacatggactctggttctggttctgacacctgggt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate