Basic Information
VIS ID
TVIS10003569
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
45699316/41616223 (Hg38)
End
45699316/41616223 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/382388; hsa-let-7a-1/Downstream/29193752;
Nearest TSS
ENST00000422679/Upstream/283261; ENST00000496386/Downstream/82687;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/256422, chr9-CpG: 23/Downstream/38887
Nearby gene
FAM27C(-707824) ;
Upstream sequence
aaagtagacagaagcattctcagaaacttctttgtgacgtttccatgcaagtcacagagttgaaccttcctttcatagagcaggtttgaaacactctttt
Downstream sequence
accagaagattaatatccaaagactggcccctgaacaaagacagcacttgccttttacacacacttctaaaagggggtggtctaacttgaaacaggctta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate