Basic Information
VIS ID
TVIS10003573
Fusion event
HBV-LOC105375911 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
79195239/78283004 (Hg38)
End
79195239/78283004 (Hg38)
Location type
Intronic
Target gene
LOC105375911
Nearest miRNA
hsa-mir-124-1/Upstream/1316154; hsa-mir-10400/Downstream/1049184;
Nearest TSS
ENST00000518652/Upstream/130682; ENST00000518467/Downstream/233135;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1282183, chr8-CpG: 46/Downstream/233194
Nearby gene
PEX2(-1281959) ; PKIA(+233097) ;
Upstream sequence
TAAGTCAAGTAGAAAAGAGGCTCTAATTGTAGGAAATAAAGCAAGAAAACTCCTTCCAAGAGAAGTTCCTTCCCACTCAGAGGGAGGAAATTGAATTTCT
Downstream sequence
tatttaggtctattatatgtgaggttatgctgaggtgtgtttctgttttattatctattatgagtcccaattctcacttcttatgtctacttatatttat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate