Basic Information
VIS ID
TVIS10003593
Fusion event
HBV-chr8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
111557524/110545295 (Hg38)
End
111557524/110545295 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/6060830; hsa-mir-10400/Downstream/2098198;
Nearest TSS
ENST00000518652/Upstream/195688; ENST00000523264/Downstream/63946;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/569452, chr8-CpG: 21/Downstream/2887302
Nearby gene
KCNV1(-570565) ; CSMD3(+1677635) ;
Upstream sequence
ACTTCAACAGTGCAAAAGACAGAAGCCTACTATcagtttatttacataaaaaagggaaggatgacccaagactagaggacttggaaatacttcggttgca
Downstream sequence
cttcatcctgctgctattttaatttccttttgaatgtgcataattttgtggcactcttctaatcaaaattatccaataacctcctatctcagagagaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate