ANKRD12 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003597
Fusion event
HBV-ANKRD12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
9226780/9226782 (Hg38)
End
9226780/9226782 (Hg38)
Location type
Intronic
Target gene
ANKRD12
miRNAs that regulate target gene
hsa-mir-342-5p ; hsa-mir-365a-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-374a-5p ; hsa-mir-155-5p ; hsa-mir-1273e ; hsa-mir-3692-3p ; hsa-mir-140-3p ; hsa-mir-144-3p
Nearest miRNA
hsa-mir-3976/Upstream/2852357; hsa-mir-1-2/Downstream/1532802;
Nearest TSS
ENST00000575820/Upstream/10002; ENST00000581641/Downstream/107659;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/89186, chr18-CpG: 134/Downstream/107116
Upstream sequence
tagactgtgtgaactccatttacatcatcaaaggaaggagatatggccatatctgcctccagatgtgatacctaaaagggatataacatcacttttttag
Downstream sequence
tattacagctgagaatgcatcatcatgagaaatgctcttttttaaaaaaaataaagccagttttgtgtcatgaaagattaagaaatgggaattttcgtaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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