LMF1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003600
Fusion event
HBV-LMF1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
981450/931450 (Hg38)
End
981450/931450 (Hg38)
Location type
Intronic
Target gene
LMF1
miRNAs that regulate target gene
hsa-mir-935
Nearest miRNA
hsa-mir-3176/Upstream/161173; hsa-mir-11401/Downstream/803535;
Nearest TSS
ENST00000527434/Upstream/10377; ENST00000566034/Downstream/16194;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1252, chr16-CpG: 36/Downstream/24452
Upstream sequence
GCTGCTTTGCGGGCCGCAGGGTCCCAGTGACCGACCCCGTGCCCCGCCCTGAACCACCTGATCTCCACTAAAGCCCATTGTGCAAAATGAAGACAAGGAA
Downstream sequence
TGTCACTGAGATGGACACAGACGCACACGCGGCTCGGATGAGCTGAGGAACGCACGCACAAACTGCATTCTCCCAGGCCGTCCCGAACGAGGCCACAGGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate